Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7674

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16041 and 16042 are separated by 414 nucleotides16042 and 16043 are separated by 561 nucleotides mRNA_7673: 16041 - K14778 DDX49, DBP8 ATP-dependent RNA helicase DDX49/DBP8, at 811,508 to 813,410 16041 mRNA_7674: 16042 - SUPERFAMILY--SSF48371, at 813,825 to 816,287 16042 mRNA_7675: 16043 - Hypothetical Protein, at 816,849 to 817,556 16043

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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813,459 - +0.3
815,275 - 16042 mRNA_7674 0.59 +1.2
816,413 + +0.1
816,562 - +0.7
816,678 - -0.8
816,692 + -0.1
816,694 - +0.2
816,695 - +0.0
816,715 + -0.8
817,072 - 16043 mRNA_7675 0.31 +0.1
817,121 - 16043 mRNA_7675 0.38 +0.5
817,146 - 16043 mRNA_7675 0.42 -0.9

Or see this region's nucleotide sequence