Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7685

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16052 and 16053 are separated by 742 nucleotides16053 and 16054 are separated by 817 nucleotides mRNA_7684: 16052 - Hypothetical Protein, at 833,060 to 834,277 16052 mRNA_7685: 16053 - Hypothetical Protein, at 835,020 to 835,589 16053 mRNA_7686: 16054 - K06185 ABCF2 ATP-binding cassette, subfamily F, member 2, at 836,407 to 838,350 16054

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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834,101 - 16052 mRNA_7684 0.85 +0.7
834,277 + +0.6
834,837 - +1.0
834,847 + -1.6
835,023 + +0.7
835,125 + 16053 mRNA_7685 0.18 -0.6
835,229 + 16053 mRNA_7685 0.37 +0.7
835,232 - 16053 mRNA_7685 0.37 +0.7
835,289 - 16053 mRNA_7685 0.47 -1.2
835,295 + 16053 mRNA_7685 0.48 -0.5
835,302 + 16053 mRNA_7685 0.49 -1.4
835,423 - 16053 mRNA_7685 0.71 -0.2
835,433 + 16053 mRNA_7685 0.72 -0.8
835,485 - 16053 mRNA_7685 0.82 +0.2
835,547 - -0.9
835,552 + +1.5
835,868 + +2.4
835,870 + +0.5
835,875 - +0.3
835,877 + +1.8
835,886 + -0.7
836,004 - +0.0

Or see this region's nucleotide sequence