Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7693

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16060 and 16061 are separated by 128 nucleotides16061 and 16062 are separated by 397 nucleotides mRNA_7692: 16060 - HMMPfam-Cell division control protein 14, SIN component-PF08045, at 850,554 to 851,989 16060 mRNA_7693: 16061 - SUPERFAMILY--SSF57701, at 852,118 to 853,465 16061 mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272 16062

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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851,138 - 16060 mRNA_7692 0.41 -3.1
851,147 - 16060 mRNA_7692 0.41 +0.5
851,267 + 16060 mRNA_7692 0.50 -0.4
851,302 - 16060 mRNA_7692 0.52 -0.6
851,324 + 16060 mRNA_7692 0.54 -1.1
851,324 + 16060 mRNA_7692 0.54 -1.5
851,453 - 16060 mRNA_7692 0.63 +2.0
851,585 - 16060 mRNA_7692 0.72 +1.4
851,599 + 16060 mRNA_7692 0.73 -0.4
851,624 - 16060 mRNA_7692 0.75 +1.3
851,628 - 16060 mRNA_7692 0.75 +0.2
851,637 + 16060 mRNA_7692 0.75 +0.3
851,878 + -0.1
851,878 + -0.9
851,878 + +0.1
852,031 + -0.2
852,048 - +0.5
852,076 + +0.5
852,284 + 16061 mRNA_7693 0.12 +1.3
852,483 - 16061 mRNA_7693 0.27 -1.8
852,483 + 16061 mRNA_7693 0.27 +0.7
852,550 + 16061 mRNA_7693 0.32 -1.4
852,551 + 16061 mRNA_7693 0.32 +0.8
852,663 - 16061 mRNA_7693 0.40 -0.1
852,891 - 16061 mRNA_7693 0.57 +0.1
852,947 - 16061 mRNA_7693 0.61 +0.4
853,132 - 16061 mRNA_7693 0.75 -1.0
853,132 - 16061 mRNA_7693 0.75 +0.5
853,281 + 16061 mRNA_7693 0.86 +1.8
853,546 + +0.0
853,554 - -0.1
853,567 + +0.1
853,679 + -0.8
853,707 - +0.6
853,710 + -0.3
854,114 - 16062 mRNA_7694 0.18 +0.4

Or see this region's nucleotide sequence