Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7695

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16062 and 16063 are separated by 658 nucleotides mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272 16062 mRNA_7695: 16063 - HMMPfam-Domain of unknown function (DUF1992)-PF09350, at 855,931 to 857,738 16063

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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855,455 - +0.9
855,592 - -1.5
855,621 - +1.1
855,624 + -1.1
855,627 + -1.0
855,629 + -0.5
855,629 - +0.3
855,632 + +0.9
855,740 - -1.3
855,769 + +0.4
855,775 + +0.8
856,266 + 16063 mRNA_7695 0.19 +0.5
856,406 + 16063 mRNA_7695 0.26 +0.4
856,515 + 16063 mRNA_7695 0.32 +0.9
856,784 + 16063 mRNA_7695 0.47 +0.2
856,787 + 16063 mRNA_7695 0.47 +0.6
857,191 + 16063 mRNA_7695 0.70 -2.2
857,221 - 16063 mRNA_7695 0.71 +3.8
857,793 + +0.5
857,931 + +0.0
857,943 - +0.1
857,961 - -0.2
857,963 - +0.2
858,060 - -0.4
858,071 - -3.6
858,073 + -0.2
858,074 - +1.1
858,082 - +1.5
858,529 + -0.5
858,667 - +0.6

Or see this region's nucleotide sequence