Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7790

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16157 and 16158 are separated by 485 nucleotides16158 and 16159 are separated by 537 nucleotides mRNA_7789: 16157 - Hypothetical Protein, at 1,071,827 to 1,073,399 16157 mRNA_7790: 16158 - Hypothetical Protein, at 1,073,885 to 1,074,580 16158 mRNA_7791: 16159 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 1,075,118 to 1,077,656 16159

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,073,046 - 16157 mRNA_7789 0.77 +0.4
1,073,128 - 16157 mRNA_7789 0.83 -0.5
1,073,221 - 16157 mRNA_7789 0.89 -0.1
1,073,227 + 16157 mRNA_7789 0.89 +0.6
1,073,530 + +0.6
1,073,572 - +0.3
1,073,688 - +1.3
1,073,714 - +2.3
1,074,025 - 16158 mRNA_7790 0.20 +0.8
1,074,125 + 16158 mRNA_7790 0.34 -0.1
1,074,415 - 16158 mRNA_7790 0.76 +0.6
1,074,718 + +2.2
1,074,728 - +0.1
1,074,866 - +0.3
1,074,875 - +1.1
1,074,886 + -0.1
1,074,887 + +1.1
1,074,892 + +0.8
1,074,893 - +0.0
1,075,020 - -0.8
1,075,024 - -1.4
1,075,027 + +1.1
1,075,033 + +1.0
1,075,034 + +0.1
1,075,040 - -0.4
1,075,057 - -1.9
1,075,210 + -2.1
1,075,336 - -1.7
1,075,506 - 16159 mRNA_7791 0.15 -1.5

Or see this region's nucleotide sequence