Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7798

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16165 and 16166 are separated by 668 nucleotides16166 and 16167 overlap by 2 nucleotides mRNA_7797: 16165 - Hypothetical Protein, at 1,089,462 to 1,090,208 16165 mRNA_7798: 16166 - Hypothetical Protein, at 1,090,877 to 1,091,572 16166 mRNA_7799: 16167 - KOG1738 Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like, at 1,091,571 to 1,096,193 16167

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,089,926 - 16165 mRNA_7797 0.62 +0.1
1,089,934 - 16165 mRNA_7797 0.63 +2.4
1,089,942 - 16165 mRNA_7797 0.64 -0.7
1,089,943 - 16165 mRNA_7797 0.64 +0.7
1,089,949 - 16165 mRNA_7797 0.65 +1.8
1,089,951 - 16165 mRNA_7797 0.65 -0.1
1,090,059 + 16165 mRNA_7797 0.80 -1.3
1,090,098 + 16165 mRNA_7797 0.85 +0.7
1,090,108 + 16165 mRNA_7797 0.86 +0.2
1,090,114 - 16165 mRNA_7797 0.87 +0.4
1,090,118 - 16165 mRNA_7797 0.88 +0.7
1,090,239 - +0.6
1,090,245 + +2.6
1,090,387 - +1.2
1,090,404 + -0.7
1,090,426 + +1.9
1,090,529 + -1.0
1,090,530 - -0.3
1,090,532 - -0.1
1,090,549 + -0.3
1,090,556 - +0.0
1,090,556 - -0.4
1,090,559 + +0.4
1,090,564 - -0.4
1,090,564 - +0.7
1,090,571 + -0.3
1,090,696 - +1.7
1,091,020 + 16166 mRNA_7798 0.21 +1.3
1,091,221 - 16166 mRNA_7798 0.49 +0.2
1,091,271 - 16166 mRNA_7798 0.57 +0.1
1,091,272 + 16166 mRNA_7798 0.57 -1.1
1,091,285 + 16166 mRNA_7798 0.59 +1.4
1,091,286 - 16166 mRNA_7798 0.59 +1.8
1,091,289 + 16166 mRNA_7798 0.59 -0.0
1,091,292 - 16166 mRNA_7798 0.60 -0.7
1,091,293 + 16166 mRNA_7798 0.60 -0.3
1,091,298 - 16166 mRNA_7798 0.60 -0.2
1,091,301 - 16166 mRNA_7798 0.61 +1.4
1,091,323 + 16166 mRNA_7798 0.64 +1.8
1,091,444 - 16166 mRNA_7798 0.81 -1.2
1,091,478 - 16166 mRNA_7798 0.86 +0.3
1,091,582 - +1.2
1,091,746 - +0.6
1,091,760 + +0.3
1,092,063 + 16167 mRNA_7799 0.11 -0.8
1,092,514 + 16167 mRNA_7799 0.20 +1.0

Or see this region's nucleotide sequence