Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7817

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16184 and 16185 are separated by 5 nucleotides16185 and 16186 are separated by 257 nucleotides mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633 16184 mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,135,639 to 1,138,436 16185 mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1,138,694 to 1,141,964 16186

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,134,904 + 16184 mRNA_7816 0.17 -2.5
1,134,921 - 16184 mRNA_7816 0.19 -1.2
1,134,929 - 16184 mRNA_7816 0.20 -0.4
1,134,933 - 16184 mRNA_7816 0.20 -1.3
1,134,934 + 16184 mRNA_7816 0.20 -1.2
1,135,010 - 16184 mRNA_7816 0.29 -0.1
1,135,070 - 16184 mRNA_7816 0.36 -1.1
1,135,072 - 16184 mRNA_7816 0.36 +0.4
1,135,082 + 16184 mRNA_7816 0.37 -0.6
1,135,082 - 16184 mRNA_7816 0.37 +1.0
1,135,102 + 16184 mRNA_7816 0.39 -0.0
1,135,102 + 16184 mRNA_7816 0.39 -0.2
1,135,104 + 16184 mRNA_7816 0.39 -1.3
1,135,292 - 16184 mRNA_7816 0.61 -0.9
1,135,325 + 16184 mRNA_7816 0.65 -0.4
1,135,374 - 16184 mRNA_7816 0.70 +0.9
1,135,520 + 16184 mRNA_7816 0.87 -0.0
1,135,535 + 16184 mRNA_7816 0.89 -0.8
1,135,537 - 16184 mRNA_7816 0.89 -0.8
1,135,705 + +2.0
1,135,837 - -0.2
1,136,148 + 16185 mRNA_7817 0.18 -1.0
1,136,149 - 16185 mRNA_7817 0.18 -1.3
1,136,386 + 16185 mRNA_7817 0.27 -0.4
1,136,721 + 16185 mRNA_7817 0.39 -1.1
1,136,870 - 16185 mRNA_7817 0.44 -1.4
1,136,994 - 16185 mRNA_7817 0.48 +0.3
1,137,197 + 16185 mRNA_7817 0.56 -0.2
1,137,334 + 16185 mRNA_7817 0.61 +1.4
1,137,503 + 16185 mRNA_7817 0.67 +0.1
1,137,569 - 16185 mRNA_7817 0.69 +1.6
1,137,700 - 16185 mRNA_7817 0.74 +1.6
1,137,908 - 16185 mRNA_7817 0.81 +0.9
1,138,070 - 16185 mRNA_7817 0.87 -0.5
1,138,477 - -0.1
1,138,503 + -0.5
1,138,516 - -1.2
1,138,844 - -0.3
1,138,959 - -0.8
1,139,214 - 16186 mRNA_7818 0.16 +1.3
1,139,402 - 16186 mRNA_7818 0.22 +0.4

Or see this region's nucleotide sequence