Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7866

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16233 and 16234 are separated by 483 nucleotides16234 and 16235 are separated by 528 nucleotides mRNA_7865: 16233 - Hypothetical Protein, at 1,259,132 to 1,259,731 16233 mRNA_7866: 16234 - Hypothetical Protein, at 1,260,215 to 1,261,528 16234 mRNA_7867: 16235 - Hypothetical Protein, at 1,262,057 to 1,262,662 16235

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,260,205 + +0.9
1,260,567 - 16234 mRNA_7866 0.27 +0.3
1,260,834 + 16234 mRNA_7866 0.47 +0.2
1,261,251 - 16234 mRNA_7866 0.79 +1.6
1,261,439 - -0.4
1,261,501 - -0.6
1,261,644 + +1.0
1,261,842 + +0.1
1,261,883 + -0.2
1,262,022 - -1.2
1,262,022 - -1.6
1,262,189 - 16235 mRNA_7867 0.22 +1.3
1,262,191 - 16235 mRNA_7867 0.22 -1.0
1,262,227 + 16235 mRNA_7867 0.28 -1.7
1,262,313 + 16235 mRNA_7867 0.42 -0.8
1,262,336 - 16235 mRNA_7867 0.46 +0.2
1,262,344 + 16235 mRNA_7867 0.47 -0.1
1,262,344 + 16235 mRNA_7867 0.47 +0.7
1,262,365 - 16235 mRNA_7867 0.51 +1.7
1,262,472 + 16235 mRNA_7867 0.68 +0.7
1,262,485 + 16235 mRNA_7867 0.71 +0.1
1,262,490 + 16235 mRNA_7867 0.71 -1.5

Or see this region's nucleotide sequence