Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7873

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16240 and 16241 are separated by 163 nucleotides16241 and 16242 are separated by 147 nucleotides mRNA_7872: 16240 - K11411 SIRT1, SIR2L1 NAD-dependent deacetylase sirtuin 1, at 1,269,870 to 1,272,263 16240 mRNA_7873: 16241 - K10258 TER, TSC13, CER10 very-long-chain enoyl-CoA reductase, at 1,272,427 to 1,274,098 16241 mRNA_7874: 16242 - K02202 CDK7 cyclin-dependent kinase 7, at 1,274,246 to 1,275,705 16242

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,271,650 - 16240 mRNA_7872 0.74 +0.8
1,271,668 + 16240 mRNA_7872 0.75 -0.1
1,271,730 + 16240 mRNA_7872 0.78 +0.6
1,271,912 + 16240 mRNA_7872 0.85 +1.0
1,274,074 + +1.2

Or see this region's nucleotide sequence