Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7912

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16279 and 16280 are separated by 760 nucleotides16280 and 16281 are separated by 176 nucleotides mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1,441 to 2,386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3,147 to 4,682 16280 mRNA_7913: 16281 - K00234 SDHA, SDH1 succinate dehydrogenase (ubiquinone) flavoprotein subunit, at 4,859 to 7,568 16281

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,601 - +0.1
2,624 + +0.1
2,636 - -0.7
2,650 - +1.5
2,781 + -0.2
2,783 - -0.8
2,928 + +1.5
2,928 + -1.3
2,928 + -1.0
2,929 + -0.1
2,934 - +0.1
2,947 - -1.4
2,951 + +0.8
2,951 + +0.3
2,954 - -2.1
3,110 + +0.3
3,236 + -2.8
3,375 - 16280 mRNA_7912 0.15 +0.0
4,339 - 16280 mRNA_7912 0.78 +0.3
4,534 + -1.9
4,534 + -1.2
4,545 + +0.2
4,548 - -0.9
4,702 - +1.5
4,955 + -0.3
5,024 + +1.0

Or see this region's nucleotide sequence