Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7930

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16297 and 16298 are separated by 447 nucleotides mRNA_7929: 16297 - K02013 ABC.FEV.A iron complex transport system ATP-binding protein, at 40,683 to 43,204 16297 mRNA_7930: 16298 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 43,652 to 44,554 16298

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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42,704 + 16297 mRNA_7929 0.80 -0.5
42,819 - 16297 mRNA_7929 0.85 -0.2
42,827 - 16297 mRNA_7929 0.85 +0.3
42,849 + 16297 mRNA_7929 0.86 +0.3
42,849 + 16297 mRNA_7929 0.86 -0.4
42,863 + 16297 mRNA_7929 0.86 -0.3
43,150 + -0.2
43,229 - +0.2
43,286 + +0.3
43,306 - +0.1
43,447 - +1.4
43,568 - -0.8
43,588 + -0.0
43,588 + -0.5
43,589 - -0.8
43,744 + 16298 mRNA_7930 0.10 +0.4
43,812 - 16298 mRNA_7930 0.18 -1.0
43,823 + 16298 mRNA_7930 0.19 +1.0
44,011 + 16298 mRNA_7930 0.40 +1.2
44,018 + 16298 mRNA_7930 0.41 +0.2
44,022 - 16298 mRNA_7930 0.41 +0.4
44,038 + 16298 mRNA_7930 0.43 -0.7
44,116 + 16298 mRNA_7930 0.51 -3.2
44,171 - 16298 mRNA_7930 0.57 +1.1
44,181 + 16298 mRNA_7930 0.59 -0.1
44,187 - 16298 mRNA_7930 0.59 -0.7
44,311 + 16298 mRNA_7930 0.73 +4.1
44,580 + +0.9
44,589 + +0.9
44,615 - +0.7
44,618 + +2.1
44,667 - +0.7
44,738 + -3.7
44,740 - +0.5
44,788 + +0.5
45,144 + +0.2
45,189 - +0.6
45,212 + -0.5
45,379 + -0.6
45,389 - +0.7
45,477 + -0.4
45,479 + +0.2

Or see this region's nucleotide sequence