Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7932

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16299 and 16300 are separated by 322 nucleotides16300 and 16301 are separated by 287 nucleotides mRNA_7931: 16299 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 46,031 to 46,898 16299 mRNA_7932: 16300 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 47,221 to 48,247 16300 mRNA_7933: 16301 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 48,535 to 49,423 16301

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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46,451 + 16299 mRNA_7931 0.48 +0.4
46,809 + 16299 mRNA_7931 0.90 +0.8
46,835 + -0.9
46,835 + -0.2
46,852 + -1.0
47,001 - -0.3
47,096 + +0.5
47,105 + +1.3
47,117 - -0.4
47,230 + +0.0
47,233 - -0.5
47,278 + +2.0
47,354 - 16300 mRNA_7932 0.13 +0.5
47,372 + 16300 mRNA_7932 0.15 +1.4
47,502 - 16300 mRNA_7932 0.27 -0.4
47,673 + 16300 mRNA_7932 0.44 +1.3
47,855 + 16300 mRNA_7932 0.62 -0.3
48,004 - 16300 mRNA_7932 0.76 +0.9
48,286 - -0.7
48,453 + +0.8
48,641 - 16301 mRNA_7933 0.12 +0.7
48,755 + 16301 mRNA_7933 0.25 +0.3
49,066 + 16301 mRNA_7933 0.60 +0.1
49,148 - 16301 mRNA_7933 0.69 +1.4
49,165 + 16301 mRNA_7933 0.71 -0.2

Or see this region's nucleotide sequence