Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7946

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16313 and 16314 are separated by 423 nucleotides16314 and 16315 are separated by 435 nucleotides mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70,630 to 71,509 16313 mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71,933 to 72,812 16314 mRNA_7947: 16315 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 73,248 to 74,114 16315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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70,955 + 16313 mRNA_7945 0.37 +0.5
70,974 - 16313 mRNA_7945 0.39 -1.1
70,989 + 16313 mRNA_7945 0.41 +2.0
71,000 - 16313 mRNA_7945 0.42 -0.1
71,117 - 16313 mRNA_7945 0.55 +0.8
71,235 + 16313 mRNA_7945 0.69 -0.5
71,412 - 16313 mRNA_7945 0.89 +1.1
71,421 + 16313 mRNA_7945 0.90 +0.7
71,534 - +2.4
71,580 - +1.9
71,586 + -1.6
71,601 + -1.4
72,077 - 16314 mRNA_7946 0.16 +0.6
72,112 - 16314 mRNA_7946 0.20 -1.4
72,118 - 16314 mRNA_7946 0.21 -0.4
72,225 + 16314 mRNA_7946 0.33 +0.6
72,297 + 16314 mRNA_7946 0.41 -0.0
72,304 + 16314 mRNA_7946 0.42 +0.6
72,322 + 16314 mRNA_7946 0.44 +0.8
72,414 - 16314 mRNA_7946 0.55 -2.4
72,415 + 16314 mRNA_7946 0.55 +0.6
72,433 + 16314 mRNA_7946 0.57 -1.1
72,450 + 16314 mRNA_7946 0.59 -0.8
72,471 - 16314 mRNA_7946 0.61 +2.0
72,506 - 16314 mRNA_7946 0.65 +1.5
72,571 + 16314 mRNA_7946 0.72 +0.1
72,573 - 16314 mRNA_7946 0.73 +1.2
72,579 - 16314 mRNA_7946 0.73 -0.0
72,580 + 16314 mRNA_7946 0.74 -0.2
72,740 - +0.2
72,815 + -0.2
72,859 + +0.9
72,903 - +1.0
72,907 - +0.1
73,058 + +0.9
73,063 - -0.3
73,074 + +2.3
73,187 - -0.0
73,222 + -1.3
73,236 + +0.2
73,339 + 16315 mRNA_7947 0.10 -0.3
73,340 - 16315 mRNA_7947 0.11 +1.0
73,357 - 16315 mRNA_7947 0.13 -0.1
73,529 - 16315 mRNA_7947 0.32 +0.9
73,530 + 16315 mRNA_7947 0.33 -1.2
73,537 + 16315 mRNA_7947 0.33 -0.4
73,779 - 16315 mRNA_7947 0.61 +0.1
73,805 + 16315 mRNA_7947 0.64 -0.1

Or see this region's nucleotide sequence