Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7975

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16342 and 16343 are separated by 587 nucleotides16343 and 16344 are separated by 405 nucleotides mRNA_7974: 16342 - Hypothetical Protein, at 128,673 to 129,137 16342 mRNA_7975: 16343 - KOG0762 Mitochondrial carrier protein, at 129,725 to 131,537 16343 mRNA_7976: 16344 - BLAST carbohydrate-binding module family 13 protein [Schizo..., at 131,943 to 133,643 16344

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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128,872 - 16342 mRNA_7974 0.43 -1.4
128,877 + 16342 mRNA_7974 0.44 -1.6
128,897 - 16342 mRNA_7974 0.48 -0.4
129,203 + +0.1
129,230 - -0.2
129,307 - +0.1
129,309 + -0.7
129,309 + -0.6
129,312 - -0.1
129,320 - +2.6
129,338 + +1.2
129,462 - +0.1
129,590 + +1.0
129,638 + +0.5
129,730 - -0.3
129,882 - -0.4
129,895 + -1.3
130,032 - 16343 mRNA_7975 0.17 -0.3
130,050 - 16343 mRNA_7975 0.18 +1.0
130,336 + 16343 mRNA_7975 0.34 -2.0
130,859 + 16343 mRNA_7975 0.63 -0.7
130,966 + 16343 mRNA_7975 0.68 +0.9
131,060 + 16343 mRNA_7975 0.74 -0.7
131,181 - 16343 mRNA_7975 0.80 +1.3
131,224 + 16343 mRNA_7975 0.83 -1.1
131,357 - -0.6
131,482 + +0.2
131,482 + +0.8
131,512 + -0.4
131,653 - -0.6
131,958 - +0.4
131,975 + +0.2
132,014 + +0.4
132,117 - 16344 mRNA_7976 0.10 -0.0
132,243 - 16344 mRNA_7976 0.18 +3.1
132,437 - 16344 mRNA_7976 0.29 -0.6
132,531 + 16344 mRNA_7976 0.35 +0.1

Or see this region's nucleotide sequence