Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7990

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16357 and 16358 are separated by 554 nucleotides mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157,953 to 158,694 16357 mRNA_7990: 16358 - Hypothetical Protein, at 159,249 to 159,873 16358

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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158,281 + 16357 mRNA_7989 0.44 +2.6
158,327 + 16357 mRNA_7989 0.50 +1.0
158,566 + 16357 mRNA_7989 0.83 -0.3
158,628 + +0.2
158,762 + +0.9
158,783 + +0.6
158,864 - +0.1
158,923 + -0.4
158,925 + +0.6
159,209 - -1.2
159,246 - -0.3
159,352 - 16358 mRNA_7990 0.16 +1.2
159,364 + 16358 mRNA_7990 0.18 -1.0
159,484 + 16358 mRNA_7990 0.38 +0.4
159,922 + +0.6
160,312 - -0.5
160,349 + +2.6
160,362 + +0.9
160,620 + +1.1
160,654 - -0.1
160,655 + -0.0
160,666 + -0.2
160,748 - -1.6
160,812 + -3.1
160,816 + -0.6
160,823 + -0.8
160,824 + -0.5
160,834 - -0.5
160,834 - -1.0
160,836 + -0.9
160,838 - -0.9
160,843 + +0.0
160,852 - +0.1
160,858 + -0.3
160,858 + -1.4

Or see this region's nucleotide sequence