Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8050

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16417 and 16418 are separated by 536 nucleotides16418 and 16419 are separated by 941 nucleotides mRNA_8049: 16417 - SUPERFAMILY--SSF52047, at 300,681 to 303,799 16417 mRNA_8050: 16418 - K02943 RP-LP2, RPLP2 large subunit ribosomal protein LP2, at 304,336 to 304,986 16418 mRNA_8051: 16419 - K02958 RP-S15e, RPS15 small subunit ribosomal protein S15e, at 305,928 to 306,584 16419

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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303,522 + +0.4
303,535 + +1.2
303,662 - +0.2
303,719 + -1.1
303,831 - +2.0
303,969 - +1.1
303,971 - +1.1
304,027 - -0.8
304,044 + +0.5
304,080 - -0.1
304,121 + -0.0
304,125 + +0.6
304,294 + +0.4

Or see this region's nucleotide sequence