Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8087

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16455 and 16456 are separated by 296 nucleotides mRNA_8087: 16455 - ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 390,776 to 392,470 16455 mRNA_8088: 16456 - Hypothetical Protein, at 392,767 to 393,298 16456

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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389,789 + +0.4
389,932 - +0.2
389,939 - +0.4
389,939 - -0.1
389,946 + +0.5
389,948 + -0.1
390,071 - -0.1
390,083 - -1.3
390,090 + +1.1
390,107 - +0.3
390,114 - +1.1
390,117 + -0.3
390,128 - +1.3
390,134 + +0.6
390,136 + -0.4
390,137 + +0.5
390,139 + +0.0
390,139 + +1.2
390,141 - +0.7
390,141 + -0.2
390,142 - +2.0
390,142 + +0.5
390,143 + -0.4
390,145 + -1.3
390,599 + +0.3
390,748 + -0.7
390,869 + +0.4
390,888 + +1.1
391,045 + 16455 mRNA_8087 0.16 -1.2
391,157 - 16455 mRNA_8087 0.22 +0.2
391,618 + 16455 mRNA_8087 0.50 +1.5
392,470 - +0.9

Or see this region's nucleotide sequence