Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8110

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16477 and 16478 are separated by 547 nucleotides16478 and 16479 are separated by 193 nucleotides mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434,477 to 437,050 16477 mRNA_8110: 16478 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 437,598 to 439,156 16478 mRNA_8111: 16479 - HMMPfam-CTD kinase subunit gamma CTK3-PF12243,HMMPfam-CTD kinase subunit gamma CTK3 C-terminus-PF12350,ProSiteProfiles-CID domain profile.-PS51391, at 439,350 to 440,597 16479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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436,599 + 16477 mRNA_8109 0.82 -0.2
436,722 + 16477 mRNA_8109 0.87 -1.8
436,865 - +0.0
436,953 - -1.5
436,962 - -0.5
437,009 - -2.7
437,051 + +1.9
437,068 + +0.3
437,140 - +0.2
437,167 - +1.5
437,182 + -0.9
437,185 + -0.8
437,190 - -0.6
437,191 + +1.4
437,195 + -1.0
437,203 + +0.5
437,204 - +0.3
437,207 - -0.5
437,208 - -2.7
437,210 - -0.6
437,213 - -1.7
437,238 - +1.4
437,253 + +0.4
437,272 - +0.5
437,278 + -0.0
437,280 + -0.3
437,298 - -0.1
437,306 + -0.1
437,309 + +0.0
437,310 + -0.6
437,337 + -0.5
437,338 - +1.1
437,365 + +0.5
437,379 + +0.0
437,382 + +1.0
437,382 - -0.8
437,390 - +0.5
437,395 + -0.0
437,395 - +0.7
437,407 - -0.1
437,413 + -0.1
437,421 - +0.5
437,423 - -0.3
437,425 + +0.5
437,426 + +0.8
437,428 + +0.1
437,470 + +0.6
437,474 - +1.2
437,477 + +0.1
437,483 - +0.8
437,485 - -1.1
437,490 + -1.1
437,496 + +0.5
437,500 + -0.3
437,508 + +0.3
437,512 + +0.0
437,516 + +1.0
437,518 + +0.2
437,521 + +0.6
437,527 - +1.1
437,529 - +0.7
437,533 + -0.7
437,539 - -2.0
437,539 + +0.4
437,546 + +1.3
437,570 - -0.6
437,594 + -0.5
437,676 - +0.2
437,688 + -0.2
437,737 - +0.2
437,830 + 16478 mRNA_8110 0.15 -0.1
437,834 + 16478 mRNA_8110 0.15 +0.4
437,976 - 16478 mRNA_8110 0.24 +0.4
437,997 - 16478 mRNA_8110 0.26 -1.1
438,154 - 16478 mRNA_8110 0.36 +0.4
438,327 - 16478 mRNA_8110 0.47 +1.1
439,177 - +1.0
439,283 - -0.3
439,298 + -0.6

Or see this region's nucleotide sequence