Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8127

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16494 and 16495 are separated by 698 nucleotides16495 and 16496 are separated by 340 nucleotides mRNA_8126: 16494 - BLAST putative 15-O-acetyltransferase Tri3 [Moniliophthora ..., at 479,641 to 482,114 16494 mRNA_8127: 16495 - BLAST CigA protein-like protein [Phycomyces blakesleean..., at 482,813 to 485,416 16495 mRNA_8128: 16496 - KOG0526 Nucleosome-binding factor SPN, POB3 subunit, at 485,757 to 486,942 16496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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481,947 - +1.5
482,528 - -0.1
483,400 + 16495 mRNA_8127 0.23 +0.1
483,573 - 16495 mRNA_8127 0.29 +0.2
483,654 + 16495 mRNA_8127 0.32 -1.5
484,632 + 16495 mRNA_8127 0.70 +2.0
484,891 + 16495 mRNA_8127 0.80 +0.2
484,909 + 16495 mRNA_8127 0.80 +0.1
485,034 - 16495 mRNA_8127 0.85 +0.3
485,328 - +0.1
485,332 - +1.5
485,334 - +0.4
485,469 - +0.5
485,499 - +0.1
485,501 + -0.6
485,503 - -0.5
485,568 + -0.5
485,601 + +0.2
485,672 + +0.1
485,707 + -1.0

Or see this region's nucleotide sequence