Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8140

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16507 and 16508 are separated by 174 nucleotides16508 and 16509 are separated by 523 nucleotides mRNA_8139: 16507 - K01139 spoT, HDDC3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 509,423 to 510,293 16507 mRNA_8140: 16508 - Hypothetical Protein, at 510,468 to 511,367 16508 mRNA_8141: 16509 - Hypothetical Protein, at 511,891 to 512,782 16509

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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509,556 + 16507 mRNA_8139 0.15 -1.7
509,841 - 16507 mRNA_8139 0.48 -0.9
510,001 + 16507 mRNA_8139 0.66 +0.1
510,040 + 16507 mRNA_8139 0.71 +0.8
510,423 + -1.1
510,735 - 16508 mRNA_8140 0.30 +1.1
510,757 + 16508 mRNA_8140 0.32 +0.2
510,985 + 16508 mRNA_8140 0.57 +0.6
511,114 - 16508 mRNA_8140 0.72 +0.4
511,183 + 16508 mRNA_8140 0.79 +0.2
511,306 - -0.3
511,313 + +1.0
511,318 - +1.8
511,934 + -0.2
512,073 + 16509 mRNA_8141 0.20 -0.4
512,361 + 16509 mRNA_8141 0.53 +0.5

Or see this region's nucleotide sequence