Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8246

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16613 and 16614 are separated by 355 nucleotides16614 and 16615 are separated by 325 nucleotides mRNA_8245: 16613 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 754,503 to 755,818 16613 mRNA_8246: 16614 - Hypothetical Protein, at 756,174 to 757,457 16614 mRNA_8247: 16615 - K01426 E3.5.1.4, amiE amidase, at 757,783 to 759,749 16615

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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755,186 + 16613 mRNA_8245 0.52 -0.5
755,781 + +0.5
755,827 - +0.4
756,806 + 16614 mRNA_8246 0.49 -1.1
756,835 + 16614 mRNA_8246 0.51 -1.0
757,841 + -0.5
758,066 - 16615 mRNA_8247 0.14 +0.7

Or see this region's nucleotide sequence