Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8264

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16631 and 16632 are separated by 298 nucleotides16632 and 16633 are separated by 264 nucleotides mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797,648 to 800,551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800,850 to 802,295 16632 mRNA_8265: 16633 - KOG0444 Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats), at 802,560 to 804,214 16633

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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800,021 - 16631 mRNA_8263 0.82 -0.3
800,035 + 16631 mRNA_8263 0.82 +0.3
800,188 + 16631 mRNA_8263 0.87 +0.3
800,300 - -0.5
800,626 - +1.2
800,648 + +1.0
801,024 + 16632 mRNA_8264 0.12 +1.0
801,195 + 16632 mRNA_8264 0.24 -0.0
801,226 - 16632 mRNA_8264 0.26 +4.4
801,639 + 16632 mRNA_8264 0.55 -0.8
801,816 - 16632 mRNA_8264 0.67 +0.7
801,937 - 16632 mRNA_8264 0.75 +0.1
802,096 - 16632 mRNA_8264 0.86 -1.2
802,262 + +0.0
802,392 + +0.6
802,528 + +0.6
802,826 + 16633 mRNA_8265 0.16 +0.8
802,987 + 16633 mRNA_8265 0.26 -0.8

Or see this region's nucleotide sequence