Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8322

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16689 and 16690 are separated by 304 nucleotides16690 and 16691 are separated by 159 nucleotides mRNA_8321: 16689 - Hypothetical Protein, at 936,288 to 937,256 16689 mRNA_8322: 16690 - Hypothetical Protein, at 937,561 to 938,825 16690 mRNA_8323: 16691 - HMMPfam-Abscisic acid G-protein coupled receptor-PF12430,HMMPfam-Protein of unknown function (DUF3735)-PF12537, at 938,985 to 941,043 16691

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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936,669 + 16689 mRNA_8321 0.39 -0.2
936,685 + 16689 mRNA_8321 0.41 -0.2
937,136 - 16689 mRNA_8321 0.88 +0.7
937,279 - -1.1
937,409 + +0.7
937,577 + +0.9
937,586 + +0.9
938,142 - 16690 mRNA_8322 0.46 +1.5
939,603 + 16691 mRNA_8323 0.30 +0.4
939,772 - 16691 mRNA_8323 0.38 -1.6

Or see this region's nucleotide sequence