Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8331

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16699 and 16700 are separated by 107 nucleotides mRNA_8331: 16699 - K02604 ORC2 origin recognition complex subunit 2, at 955,011 to 956,688 16699 mRNA_8332: 16700 - K10082 LMAN2, VIP36 lectin, mannose-binding 2, at 956,796 to 958,192 16700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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954,228 + -0.3
954,389 + -0.6
954,563 - -0.2
954,956 - -1.2
954,985 + +0.7
956,354 + 16699 mRNA_8331 0.80 +0.8
956,739 - +0.9
956,755 - -1.9
956,763 + -0.9
956,771 - +1.3
956,785 - +0.8
956,879 + +0.3
957,538 + 16700 mRNA_8332 0.53 +1.3
957,654 - 16700 mRNA_8332 0.61 +1.4

Or see this region's nucleotide sequence