Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8356

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16723 and 16724 are separated by 259 nucleotides16724 and 16725 are separated by 355 nucleotides mRNA_8355: 16723 - KOG2111 Uncharacterized conserved protein, contains WD40 repeats, at 1,016,689 to 1,018,583 16723 mRNA_8356: 16724 - K13985 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D, at 1,018,843 to 1,020,921 16724 mRNA_8357: 16725 - K01739 metB cystathionine gamma-synthase, at 1,021,277 to 1,023,018 16725

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,018,241 - 16723 mRNA_8355 0.82 -1.0
1,018,242 + 16723 mRNA_8355 0.82 +1.4
1,018,266 + 16723 mRNA_8355 0.83 +0.4
1,018,539 - -0.8
1,018,701 - -0.0
1,018,707 - -0.6
1,018,714 + +1.5
1,018,971 - -1.4
1,019,012 + -0.5
1,019,107 - 16724 mRNA_8356 0.13 +0.0
1,019,129 - 16724 mRNA_8356 0.14 +0.2
1,019,161 - 16724 mRNA_8356 0.15 -1.1
1,019,161 - 16724 mRNA_8356 0.15 +0.7
1,019,190 + 16724 mRNA_8356 0.17 +0.1
1,019,228 + 16724 mRNA_8356 0.19 +1.0
1,019,589 - 16724 mRNA_8356 0.36 +0.8
1,019,725 + 16724 mRNA_8356 0.42 -1.0
1,019,859 - 16724 mRNA_8356 0.49 -0.2
1,019,873 + 16724 mRNA_8356 0.50 +2.0
1,020,023 - 16724 mRNA_8356 0.57 -0.7
1,020,027 + 16724 mRNA_8356 0.57 +0.3
1,020,177 + 16724 mRNA_8356 0.64 -0.6
1,020,317 - 16724 mRNA_8356 0.71 +0.4
1,020,345 + 16724 mRNA_8356 0.72 +2.4
1,020,455 + 16724 mRNA_8356 0.78 -0.5
1,020,581 - 16724 mRNA_8356 0.84 +0.5
1,020,588 + 16724 mRNA_8356 0.84 -0.1
1,020,600 - 16724 mRNA_8356 0.85 +0.3
1,020,752 + +0.9
1,020,993 - +0.6
1,021,056 - -0.5
1,021,082 + -0.9
1,021,157 - +0.3
1,021,158 + +0.8
1,021,169 + -0.0
1,021,196 - +1.2
1,021,208 - +0.4
1,021,246 + +0.0
1,021,249 - -0.6
1,021,338 + +0.3
1,021,378 - +0.0
1,021,782 + 16725 mRNA_8357 0.29 -0.4

Or see this region's nucleotide sequence