Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8398

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16765 and 16766 are separated by 213 nucleotides mRNA_8397: 16765 - K02946 RP-S10, MRPS10, rpsJ small subunit ribosomal protein S10, at 1,122,162 to 1,123,126 16765 mRNA_8398: 16766 - HMMPfam-Histone deacetylation protein Rxt3-PF08642, at 1,123,340 to 1,126,588 16766

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,123,004 + 16765 mRNA_8397 0.87 -1.7
1,123,155 + +2.0
1,123,212 - +1.2
1,123,259 - +0.6
1,123,263 - +1.2
1,123,267 - +0.1
1,123,273 + +0.4
1,123,274 + -0.8
1,123,280 - -0.8
1,123,281 - -0.2
1,123,282 + +1.1
1,123,284 + +0.4
1,123,286 + -0.2
1,123,289 - +0.5
1,123,290 + -0.0
1,123,292 - +1.2
1,123,337 - +0.6
1,123,448 + +0.1
1,123,607 + +0.0
1,123,737 + 16766 mRNA_8398 0.12 -0.1
1,123,742 + 16766 mRNA_8398 0.12 +2.6
1,123,745 + 16766 mRNA_8398 0.12 -0.1
1,123,756 + 16766 mRNA_8398 0.13 +0.7
1,123,776 + 16766 mRNA_8398 0.13 +0.4
1,123,883 + 16766 mRNA_8398 0.17 -0.5
1,123,893 + 16766 mRNA_8398 0.17 +1.4
1,123,917 + 16766 mRNA_8398 0.18 +1.6
1,124,049 - 16766 mRNA_8398 0.22 +1.7
1,124,059 + 16766 mRNA_8398 0.22 +1.1
1,124,064 + 16766 mRNA_8398 0.22 +0.2
1,124,089 + 16766 mRNA_8398 0.23 +1.3
1,124,188 - 16766 mRNA_8398 0.26 +1.8
1,124,529 + 16766 mRNA_8398 0.37 +2.1
1,124,616 + 16766 mRNA_8398 0.39 +1.8
1,124,768 - 16766 mRNA_8398 0.44 +0.5
1,124,911 - 16766 mRNA_8398 0.48 -0.4
1,125,230 - 16766 mRNA_8398 0.58 +0.1
1,125,603 - 16766 mRNA_8398 0.70 +0.2
1,125,647 + 16766 mRNA_8398 0.71 +1.3
1,125,651 + 16766 mRNA_8398 0.71 +0.2
1,125,657 + 16766 mRNA_8398 0.71 -0.8
1,125,980 + 16766 mRNA_8398 0.81 +0.6
1,126,240 - 16766 mRNA_8398 0.89 -1.0
1,126,508 - -1.5
1,126,548 - +0.4
1,126,566 + +0.6
1,126,663 - -0.1
1,126,691 - +1.7
1,126,709 - +0.2
1,126,716 - +0.7
1,126,836 + -0.4
1,126,847 - -0.9
1,126,991 - +0.8
1,127,000 + +0.9
1,127,140 - -0.5
1,127,171 - +0.4
1,127,404 - +1.1

Or see this region's nucleotide sequence