Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8434

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16801 and 16802 are separated by 135 nucleotides16802 and 16803 are separated by 245 nucleotides mRNA_8433: 16801 - SUPERFAMILY--SSF54909, at 1,219,119 to 1,219,808 16801 mRNA_8434: 16802 - SUPERFAMILY--SSF55729, at 1,219,944 to 1,220,514 16802 mRNA_8435: 16803 - Hypothetical Protein, at 1,220,760 to 1,221,557 16803

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,219,029 - +0.1
1,219,034 - +1.1
1,219,094 + +0.5
1,219,195 - 16801 mRNA_8433 0.11 +0.1
1,219,328 + 16801 mRNA_8433 0.30 +1.3
1,219,459 + 16801 mRNA_8433 0.49 +0.7
1,219,499 + 16801 mRNA_8433 0.55 +0.6
1,219,590 + 16801 mRNA_8433 0.68 -0.4
1,219,607 + 16801 mRNA_8433 0.71 +0.9
1,219,632 - 16801 mRNA_8433 0.74 -0.5
1,220,027 - 16802 mRNA_8434 0.15 +1.3
1,220,049 - 16802 mRNA_8434 0.18 +0.6
1,220,193 + 16802 mRNA_8434 0.44 -0.1
1,220,357 - 16802 mRNA_8434 0.72 -0.2
1,220,489 + +0.7
1,220,794 + +0.2
1,220,909 - 16803 mRNA_8435 0.19 +0.2
1,221,073 + 16803 mRNA_8435 0.39 -0.1
1,221,381 - 16803 mRNA_8435 0.78 -1.0

Or see this region's nucleotide sequence