Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8475

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16842 and 16843 are separated by 480 nucleotides16843 and 16844 are separated by 891 nucleotides mRNA_8474: 16842 - Hypothetical Protein, at 1,313,231 to 1,316,089 16842 mRNA_8475: 16843 - K03113 EIF1, SUI1 translation initiation factor 1, at 1,316,570 to 1,317,509 16843 mRNA_8476: 16844 - BLAST glycoside hydrolase family 43 protein [Mycena chlorop..., at 1,318,401 to 1,318,799 16844

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,315,582 + 16842 mRNA_8474 0.82 +0.5
1,315,738 - 16842 mRNA_8474 0.88 +0.7
1,315,760 - 16842 mRNA_8474 0.88 -0.3
1,315,799 - 16842 mRNA_8474 0.90 +1.1
1,315,839 - +0.7
1,315,910 + +0.7
1,315,913 - +0.4
1,315,920 + -0.7
1,316,088 - +0.6
1,316,288 + -0.3
1,317,575 + -0.2
1,317,700 - +1.4
1,317,713 + -0.1
1,317,714 - -1.1
1,317,872 - +2.1
1,317,876 - +0.2
1,317,896 + -0.0
1,317,983 - +1.1
1,317,999 + -2.2
1,318,023 + -0.4
1,318,088 + +0.6
1,318,146 - +0.8
1,318,149 + +1.2
1,318,172 - +0.2
1,318,172 - -0.1
1,318,200 - -0.8
1,318,226 - +0.2
1,318,342 + +1.0
1,318,404 + +0.4

Or see this region's nucleotide sequence