Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8484

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16851 and 16852 are separated by 222 nucleotides16852 and 16853 are separated by 223 nucleotides16853 and 16854 are separated by 158 nucleotides mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1,332,455 to 1,336,946 16851 mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1,337,169 to 1,338,536 16852 mRNA_8485: 16853 - K12946 SPCS1 signal peptidase complex subunit 1, at 1,338,760 to 1,339,317 16853 mRNA_8486: 16854 - KOG1162 Predicted small molecule transporter, at 1,339,476 to 1,341,474 16854

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,336,285 - 16851 mRNA_8483 0.85 -0.6
1,336,305 + 16851 mRNA_8483 0.86 -0.5
1,336,308 + 16851 mRNA_8483 0.86 -0.0
1,336,431 - 16851 mRNA_8483 0.89 -0.8
1,336,438 - 16851 mRNA_8483 0.89 -0.9
1,336,446 + 16851 mRNA_8483 0.89 +0.3
1,336,523 - -0.9
1,336,527 + +0.2
1,336,738 - +1.3
1,336,999 + +0.3
1,336,999 + -0.2
1,337,004 - -0.6
1,337,028 + -0.1
1,337,075 - -0.8
1,337,081 - +1.2
1,337,088 + +1.5
1,337,134 + +0.0
1,337,153 + +1.0
1,337,245 - -0.7
1,337,266 + -0.4
1,337,269 + +1.5
1,337,269 + -0.9
1,337,291 - -0.8
1,337,352 - 16852 mRNA_8484 0.13 +0.1
1,337,361 + 16852 mRNA_8484 0.14 +3.1
1,337,416 - 16852 mRNA_8484 0.18 +0.3
1,337,475 + 16852 mRNA_8484 0.22 +0.1
1,337,613 + 16852 mRNA_8484 0.32 -0.1
1,337,860 - 16852 mRNA_8484 0.51 +1.0
1,337,861 + 16852 mRNA_8484 0.51 +0.7
1,337,987 + 16852 mRNA_8484 0.60 +0.2
1,338,251 + 16852 mRNA_8484 0.79 -0.2
1,338,257 - 16852 mRNA_8484 0.80 -0.1
1,338,352 + 16852 mRNA_8484 0.86 -2.7
1,338,419 - -1.0
1,338,429 - +0.0
1,338,597 + +0.3
1,338,605 + +0.3
1,338,714 + -1.1
1,338,725 - +1.3
1,338,725 - +0.2
1,338,734 - -0.3
1,338,750 - -0.0
1,338,752 + +0.7
1,338,755 - +1.0
1,338,755 + -0.6
1,338,864 + 16853 mRNA_8485 0.19 +0.2
1,338,873 + 16853 mRNA_8485 0.20 +0.5
1,338,885 - 16853 mRNA_8485 0.22 +1.4
1,338,887 + 16853 mRNA_8485 0.23 -0.1
1,338,977 - 16853 mRNA_8485 0.39 +0.3
1,339,037 + 16853 mRNA_8485 0.50 -0.2
1,339,291 - -0.2
1,339,325 + +0.6
1,339,463 + -0.3
1,339,484 + -0.0
1,339,532 - -1.2

Or see this region's nucleotide sequence