Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_14

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_14: 8382 - K07199 PRKAB 5'-AMP-activated protein kinase, regulatory beta subunit, at 36,682 to 38,243 8382

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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35,824 - +0.2
35,850 + -1.6
36,208 - +0.2
36,561 + -3.0
36,572 + -2.6
36,584 - -0.6
37,138 + 8382 mRNA_14 0.29 -0.5
37,280 - 8382 mRNA_14 0.38 -0.5
37,529 - 8382 mRNA_14 0.54 -0.8
37,562 + 8382 mRNA_14 0.56 -2.4
37,822 - 8382 mRNA_14 0.73 -1.3
38,153 + -5.7
38,294 - +0.2
38,429 - +0.2
38,433 - -1.2
38,535 + +0.2
38,596 + -0.5
38,601 - +1.6
38,607 - +0.4
38,620 - -1.0

Or see this region's nucleotide sequence