Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_22

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8389 and 8390 are separated by 554 nucleotides8390 and 8391 are separated by 246 nucleotides mRNA_21: 8389 - SUPERFAMILY--SSF51045, at 59,520 to 60,624 8389 mRNA_22: 8390 - SUPERFAMILY--SSF51045, at 61,179 to 62,127 8390 mRNA_23: 8391 - K02938 RP-L8e, RPL8 large subunit ribosomal protein L8e, at 62,374 to 63,560 8391

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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60,661 - +1.9
60,678 - +0.1
60,688 - +1.1
61,142 - +0.3
61,523 - 8390 mRNA_22 0.36 +0.2
61,849 + 8390 mRNA_22 0.71 -0.5
61,852 + 8390 mRNA_22 0.71 +0.3
61,854 + 8390 mRNA_22 0.71 +1.0
61,984 + 8390 mRNA_22 0.85 +0.3
62,188 + -0.3

Or see this region's nucleotide sequence