Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_90

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8457 and 8458 are separated by 363 nucleotides8458 and 8459 are separated by 219 nucleotides mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213,359 to 214,966 8457 mRNA_90: 8458 - Hypothetical Protein, at 215,330 to 215,955 8458 mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894 8459

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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214,384 + 8457 mRNA_89 0.64 +0.7
214,528 - 8457 mRNA_89 0.73 +0.2
214,647 - 8457 mRNA_89 0.80 -1.6
215,100 + -1.0
215,561 - 8458 mRNA_90 0.37 -1.2
215,827 + 8458 mRNA_90 0.79 -0.5
215,848 + 8458 mRNA_90 0.83 -0.2
215,849 - 8458 mRNA_90 0.83 +1.6
216,122 + +2.0
216,134 - -0.8
216,149 - +0.1
216,253 - 8459 mRNA_91 0.11 +0.2
216,567 - 8459 mRNA_91 0.54 -1.1
216,580 + 8459 mRNA_91 0.56 -0.0
216,718 - 8459 mRNA_91 0.75 -1.8
216,739 - 8459 mRNA_91 0.78 -0.9

Or see this region's nucleotide sequence