Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8495 and 8496 are separated by 388 nucleotides mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304,252 to 307,207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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303,311 - +0.7
303,311 - +1.8
303,325 + +0.1
303,439 - +2.5
303,444 + -0.8
303,570 - +0.8
303,840 - -0.5
304,007 - -0.0
304,333 + +0.1
304,439 - +0.7
304,603 + 8495 mRNA_127 0.12 -0.3
304,933 - 8495 mRNA_127 0.23 +1.9
305,053 - 8495 mRNA_127 0.27 -0.1
305,064 + 8495 mRNA_127 0.27 +0.6
305,450 - 8495 mRNA_127 0.41 -0.1
305,468 - 8495 mRNA_127 0.41 +0.1
305,566 - 8495 mRNA_127 0.44 -0.1
305,852 + 8495 mRNA_127 0.54 -0.9
306,191 - 8495 mRNA_127 0.66 +0.9
306,337 + 8495 mRNA_127 0.71 +1.5
306,834 - 8495 mRNA_127 0.87 +1.2
306,877 - 8495 mRNA_127 0.89 -0.2
306,913 + -2.3
307,185 - +0.8
307,205 - -0.4
307,285 + -0.4
307,305 - +0.1
307,482 + +0.8
307,487 + +0.2
307,515 + +0.6
307,600 - -0.2
307,629 + -0.8
307,634 + +0.9
307,719 + -0.0
307,785 - -2.4
307,886 - +0.9
308,051 + +0.7
308,064 - -4.2
308,146 + 8496 mRNA_128 0.12 +2.3

Or see this region's nucleotide sequence