Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_139

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8506 and 8507 are separated by 323 nucleotides8507 and 8508 are separated by 133 nucleotides mRNA_138: 8506 - KOG4473 Uncharacterized membrane protein, at 332,077 to 333,617 8506 mRNA_139: 8507 - K14538 NUG1, GNL3 nuclear GTP-binding protein, at 333,941 to 336,511 8507 mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336,645 to 339,470 8508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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333,228 - 8506 mRNA_138 0.75 -2.0
333,619 + -0.3
333,769 + -0.6
333,818 + -0.8
334,024 - +0.4
334,539 - 8507 mRNA_139 0.23 +1.0

Or see this region's nucleotide sequence