Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_145

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8512 and 8513 are separated by 284 nucleotides8513 and 8514 are separated by 128 nucleotides mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358,360 to 365,387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365,672 to 367,146 8513 mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367,275 to 368,042 8514

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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365,192 + +0.2
365,197 + -2.1
365,314 + +1.0
365,440 + +0.5
365,465 - -0.7
365,472 - -0.5
365,517 + +0.3
365,617 + -0.5
365,631 + +0.3
365,759 - +1.8
365,759 - +1.9
365,766 + +1.9
366,504 - 8513 mRNA_145 0.56 +0.8
366,772 - 8513 mRNA_145 0.75 -1.6
366,780 - 8513 mRNA_145 0.75 +0.7

Or see this region's nucleotide sequence