Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_170

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8537 and 8538 are separated by 243 nucleotides8538 and 8539 are separated by 161 nucleotides mRNA_169: 8537 - K14306 NUP62, NSP1 nuclear pore complex protein Nup62, at 415,068 to 417,360 8537 mRNA_170: 8538 - K12179 COPS6, CSN6 COP9 signalosome complex subunit 6, at 417,604 to 419,070 8538 mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419,232 to 420,600 8539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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417,757 + 8538 mRNA_170 0.10 -0.6
417,782 - 8538 mRNA_170 0.12 +1.2
417,928 - 8538 mRNA_170 0.22 -1.8
418,086 + 8538 mRNA_170 0.33 -0.4
418,536 + 8538 mRNA_170 0.64 -0.5
418,650 - 8538 mRNA_170 0.71 -0.9
418,672 + 8538 mRNA_170 0.73 -0.4
418,696 + 8538 mRNA_170 0.74 +2.9
418,827 - 8538 mRNA_170 0.83 -1.3
418,837 + 8538 mRNA_170 0.84 -1.7
418,838 - 8538 mRNA_170 0.84 -1.9
419,130 - -0.2
419,133 + +0.6

Or see this region's nucleotide sequence