Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_174

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8541 and 8542 are separated by 456 nucleotides8542 and 8543 are separated by 677 nucleotides mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969 8541 mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426,426 to 428,792 8542 mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429,470 to 431,854 8543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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425,700 - +0.4
425,883 + +0.6
425,986 - +1.0
426,012 + +0.7
426,034 - +0.5
426,141 + -1.5
426,165 - -0.2
426,589 - +0.2
426,947 + 8542 mRNA_174 0.22 -0.4
427,353 + 8542 mRNA_174 0.39 -0.6
427,362 - 8542 mRNA_174 0.40 +0.9
428,074 - 8542 mRNA_174 0.70 +0.3
428,550 + 8542 mRNA_174 0.90 +0.2
429,227 + -0.1

Or see this region's nucleotide sequence