Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_185

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8552 and 8553 are separated by 314 nucleotides8553 and 8554 are separated by 387 nucleotides mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446,665 to 448,836 8552 mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449,151 to 451,288 8553 mRNA_186: 8554 - Hypothetical Protein, at 451,676 to 453,998 8554

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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448,592 - 8552 mRNA_184 0.89 -0.4
448,617 - 8552 mRNA_184 0.90 +0.1
448,843 - +0.2
449,036 - -0.3
449,038 - -1.6
449,042 + -1.2
449,043 + -0.6
449,044 - +0.3
449,051 - +0.9
449,082 + -2.1
449,090 + -1.2
449,091 - +1.7
449,105 + +0.6
449,113 + +1.0
449,139 + +0.2
449,269 - +1.1
449,296 - -0.2
449,298 + +1.3
449,557 - 8553 mRNA_185 0.19 -0.5
449,846 - 8553 mRNA_185 0.33 -0.1
450,281 - 8553 mRNA_185 0.53 +0.4
450,282 - 8553 mRNA_185 0.53 -0.3
450,434 - 8553 mRNA_185 0.60 -1.6
450,567 - 8553 mRNA_185 0.66 -0.1
450,612 + 8553 mRNA_185 0.68 +0.2
451,058 - 8553 mRNA_185 0.89 -0.9
451,324 - +0.6
451,326 + -0.1
451,338 + +0.9
451,784 - +0.8

Or see this region's nucleotide sequence