Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_195

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8562 and 8563 are separated by 177 nucleotides8563 and 8564 are separated by 160 nucleotides mRNA_194: 8562 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 473,851 to 475,704 8562 mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475,882 to 478,455 8563 mRNA_196: 8564 - K11230 SSK2 mitogen-activated protein kinase kinase kinase, at 478,616 to 483,273 8564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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474,961 - 8562 mRNA_194 0.60 +0.5
475,410 - 8562 mRNA_194 0.84 +0.3
475,696 - +0.4
475,722 - -0.9
475,755 + +0.2
478,518 + -0.6
478,529 + +0.1
478,854 + -0.5

Or see this region's nucleotide sequence