Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_200

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8567 and 8568 are separated by 803 nucleotides8568 and 8569 are separated by 622 nucleotides mRNA_199: 8567 - Hypothetical Protein, at 486,367 to 488,620 8567 mRNA_200: 8568 - K15541 MPE1 protein MPE1, at 489,424 to 492,149 8568 mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492,772 to 495,021 8569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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488,455 - -0.4
488,854 - -1.4
488,859 - -1.2
488,873 - -0.7
488,873 - -0.4
488,896 + -0.2
488,983 + -0.8
489,000 - -1.0
489,141 - -1.1
489,280 - -1.7
489,291 - +2.2
489,298 + +0.2
489,308 + +0.2
489,308 + +0.8
489,310 - +0.4
489,322 + +1.3
489,484 + -0.5
489,591 - -1.3
492,370 - +0.5
492,372 + -0.5
492,377 - +0.3
492,504 - +0.1
492,515 - -0.9
492,521 + -0.2
492,522 - +0.8
492,526 + -0.0
492,527 + -0.3
492,535 + -0.4
492,536 - +0.8
492,552 - -1.1
492,553 - +0.4
492,682 + -0.2
492,813 - +0.1
492,822 + -0.2
492,832 + +0.4

Or see this region's nucleotide sequence