Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_239

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8606 and 8607 are separated by 351 nucleotides8607 and 8608 are separated by 857 nucleotides mRNA_238: 8606 - Hypothetical Protein, at 585,239 to 585,472 8606 mRNA_239: 8607 - K01809 manA, MPI mannose-6-phosphate isomerase, at 585,824 to 587,660 8607 mRNA_240: 8608 - KOG0254 Predicted transporter (major facilitator superfamily), at 588,518 to 590,085 8608

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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584,904 + +1.2
584,921 + -0.1
585,039 + +1.8
585,170 - +0.1
585,178 - +1.0
585,454 - +0.0
585,636 - -0.3
585,711 + +0.5
585,758 + -0.0
585,764 + +0.9
585,769 + +0.7
585,769 - +0.4
587,649 - +0.9
587,673 - +0.2
587,814 + +0.5
587,820 + -0.5
587,834 + -0.1
587,845 + +0.4
588,000 - +0.9
588,113 - -1.4
588,257 - +0.8
588,263 + +0.5
588,271 + +0.3
588,414 + +1.7
588,552 + +2.4

Or see this region's nucleotide sequence