Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_264

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8632 and 8633 are separated by 286 nucleotides mRNA_264: 8632 - BLAST phosphoglycerate mutase-like protein [Sanghuangporus ..., at 636,296 to 637,192 8632 mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717 8633

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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635,325 - +1.0
635,329 - +0.5
635,362 - -1.4
635,772 - -1.6
636,493 + 8632 mRNA_264 0.22 +0.1
636,494 + 8632 mRNA_264 0.22 -0.7
636,599 + 8632 mRNA_264 0.34 +0.3
636,764 + 8632 mRNA_264 0.52 +0.1
636,925 - 8632 mRNA_264 0.70 +0.1
636,936 - 8632 mRNA_264 0.71 -1.4
636,939 + 8632 mRNA_264 0.72 -0.2
637,072 + 8632 mRNA_264 0.87 +0.5
637,225 - -0.3
637,225 - +0.6
637,229 + +0.7
637,232 - -0.6
637,370 + +2.2
637,374 + -0.5
637,381 - -0.2
637,511 - -0.9
637,661 - +0.4

Or see this region's nucleotide sequence