Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_273

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8640 and 8641 are separated by 380 nucleotides8641 and 8642 are separated by 71 nucleotides mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654,316 to 655,397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591 8641 mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657,663 to 658,330 8642

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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654,863 - 8640 mRNA_272 0.51 -1.5
655,441 - -0.1
655,580 + +0.0
655,583 + -2.0
655,586 - +1.1
655,597 - +0.5
655,603 + -0.3
655,603 + +0.4
655,603 + +0.0
655,605 + +0.7
655,607 + +0.0
655,609 - -2.4
655,610 + -0.8
655,612 + -1.4
655,623 + -0.4
655,725 - +0.4
655,762 + -0.3
655,768 + -0.6
655,768 + -0.0
656,313 + 8641 mRNA_273 0.29 +0.8
656,471 - 8641 mRNA_273 0.38 +1.5
656,615 - 8641 mRNA_273 0.46 +2.0
656,874 - 8641 mRNA_273 0.60 -0.4
657,472 - +0.9
657,622 - -1.4
657,648 + -1.5
657,673 + -1.0
657,843 + 8642 mRNA_274 0.27 +1.1
658,248 + 8642 mRNA_274 0.88 +1.5
658,399 - +1.3
658,430 + +0.3
658,524 - -1.1

Or see this region's nucleotide sequence