Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_274

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8641 and 8642 are separated by 71 nucleotides mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591 8641 mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657,663 to 658,330 8642

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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656,874 - 8641 mRNA_273 0.60 -0.4
657,472 - +0.9
657,622 - -1.4
657,648 + -1.5
657,673 + -1.0
657,843 + 8642 mRNA_274 0.27 +1.1
658,248 + 8642 mRNA_274 0.88 +1.5
658,399 - +1.3
658,430 + +0.3
658,524 - -1.1
658,600 - -0.5

Or see this region's nucleotide sequence