Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_281

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8649 and 8650 are separated by 948 nucleotides mRNA_281: 8649 - KOG0653 Cyclin B and related kinase-activating proteins, at 669,704 to 671,491 8649 mRNA_282: 8650 - Hypothetical Protein, at 672,440 to 673,215 8650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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668,955 + -0.9
669,012 - +0.1
669,015 - +0.5
669,423 - -0.3
669,424 + -0.0
669,565 - +0.5
669,571 + -0.2
669,705 - -0.3
671,498 - +0.2
671,498 - -0.2
671,509 - +1.5
671,537 + -0.6
671,561 - +0.1
671,564 + +1.0
671,665 - +0.4
671,674 - +0.6
671,681 + +0.5
671,681 - -0.2
671,694 + -0.0
671,694 + +0.8
671,700 - -0.3
671,704 + +0.3
671,825 + +2.6
671,843 + +0.2
671,845 - +0.9
671,846 - +0.8
671,848 + +1.5
671,850 - +1.0
671,854 + +1.6
671,863 - -1.5
671,866 - +1.1
671,866 + +0.4
671,866 + +0.3
671,867 - +1.4
671,873 + +1.9
671,875 - -0.4
671,875 - +0.5
671,881 + -0.1
671,885 + +1.7
671,886 - +1.2
671,893 - +1.1
671,902 + +1.0
671,920 + +1.7
671,927 + +2.0
671,995 - -0.1
672,003 + +0.7
672,004 - -1.0
672,009 - +0.8
672,018 + -0.0
672,023 - -0.3
672,029 - +1.2
672,029 + +0.8
672,038 - +0.5
672,044 - -1.1
672,044 + +1.4
672,045 + +1.3
672,049 + +1.1
672,058 - +0.2
672,139 - +0.4
672,146 + -0.9
672,164 + +0.5
672,165 - +1.4
672,165 - -0.1
672,169 - -1.0
672,175 - +1.6
672,190 - +0.4
672,276 + -0.1
672,293 - -1.2
672,309 + -0.8
672,320 - -0.7
672,331 + +1.2
672,336 - +0.6
672,357 + +0.0
672,360 + -0.5
672,363 + -1.4
672,372 - -0.5
672,375 + +0.8
672,376 - +1.0
672,379 + +0.0
672,379 + +0.4
672,386 + +1.0
672,395 + +0.3
672,399 + +0.3
672,403 - +0.1
672,430 - -1.0
672,479 + -1.2

Or see this region's nucleotide sequence