Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_282

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8649 and 8650 are separated by 948 nucleotides8650 and 8651 are separated by 698 nucleotides mRNA_281: 8649 - KOG0653 Cyclin B and related kinase-activating proteins, at 669,704 to 671,491 8649 mRNA_282: 8650 - Hypothetical Protein, at 672,440 to 673,215 8650 mRNA_283: 8651 - K00872 thrB1 homoserine kinase, at 673,914 to 675,244 8651

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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671,498 - +0.2
671,498 - -0.2
671,509 - +1.5
671,537 + -0.6
671,561 - +0.1
671,564 + +1.0
671,665 - +0.4
671,674 - +0.6
671,681 + +0.5
671,681 - -0.2
671,694 + -0.0
671,694 + +0.8
671,700 - -0.3
671,704 + +0.3
671,825 + +2.6
671,843 + +0.2
671,845 - +0.9
671,846 - +0.8
671,848 + +1.5
671,850 - +1.0
671,854 + +1.6
671,863 - -1.5
671,866 - +1.1
671,866 + +0.4
671,866 + +0.3
671,867 - +1.4
671,873 + +1.9
671,875 - -0.4
671,875 - +0.5
671,881 + -0.1
671,885 + +1.7
671,886 - +1.2
671,893 - +1.1
671,902 + +1.0
671,920 + +1.7
671,927 + +2.0
671,995 - -0.1
672,003 + +0.7
672,004 - -1.0
672,009 - +0.8
672,018 + -0.0
672,023 - -0.3
672,029 - +1.2
672,029 + +0.8
672,038 - +0.5
672,044 - -1.1
672,044 + +1.4
672,045 + +1.3
672,049 + +1.1
672,058 - +0.2
672,139 - +0.4
672,146 + -0.9
672,164 + +0.5
672,165 - +1.4
672,165 - -0.1
672,169 - -1.0
672,175 - +1.6
672,190 - +0.4
672,276 + -0.1
672,293 - -1.2
672,309 + -0.8
672,320 - -0.7
672,331 + +1.2
672,336 - +0.6
672,357 + +0.0
672,360 + -0.5
672,363 + -1.4
672,372 - -0.5
672,375 + +0.8
672,376 - +1.0
672,379 + +0.0
672,379 + +0.4
672,386 + +1.0
672,395 + +0.3
672,399 + +0.3
672,403 - +0.1
672,430 - -1.0
672,479 + -1.2
672,506 - +0.9
672,529 - 8650 mRNA_282 0.11 +0.4
672,589 + 8650 mRNA_282 0.19 +0.2
672,699 + 8650 mRNA_282 0.33 -0.9
672,774 - 8650 mRNA_282 0.43 -0.4
672,799 + 8650 mRNA_282 0.46 +0.4
672,799 - 8650 mRNA_282 0.46 -2.3
672,800 + 8650 mRNA_282 0.46 -1.6
672,805 + 8650 mRNA_282 0.47 +0.0
672,821 - 8650 mRNA_282 0.49 +0.9
672,824 - 8650 mRNA_282 0.49 +0.5
672,827 + 8650 mRNA_282 0.50 +0.5
672,828 + 8650 mRNA_282 0.50 +0.4
672,851 + 8650 mRNA_282 0.53 -0.5
672,876 - 8650 mRNA_282 0.56 +0.1
672,952 - 8650 mRNA_282 0.66 +1.0
673,010 + 8650 mRNA_282 0.73 -2.5
673,014 + 8650 mRNA_282 0.74 -0.4
673,059 - 8650 mRNA_282 0.80 +0.6
673,165 + -0.6
673,215 + +0.5
673,523 + +1.5
673,882 + -0.3

Or see this region's nucleotide sequence