Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_298

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8666 and 8667 are separated by 238 nucleotides mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705,560 to 707,244 8666 mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587 8667

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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705,303 - -0.8
705,430 - -0.7
705,445 + +0.3
706,045 - 8666 mRNA_298 0.29 -0.3
706,138 + 8666 mRNA_298 0.34 -2.5
706,171 - 8666 mRNA_298 0.36 -0.4
706,321 - 8666 mRNA_298 0.45 -1.7
706,485 + 8666 mRNA_298 0.55 +0.4
706,614 - 8666 mRNA_298 0.63 -0.0
706,917 - 8666 mRNA_298 0.81 +0.3
707,073 - 8666 mRNA_298 0.90 +1.0
707,093 + -0.2
707,187 + -0.5
707,204 - +0.1
707,334 - -0.9
707,336 - +0.6
707,350 - +1.2
707,364 - +0.9
707,389 + +2.0
707,417 - -0.8
707,426 + +0.6
707,427 - -0.9
707,427 - +0.1
707,538 - -2.6
707,581 + -1.9
707,690 - 8667 mRNA_299 0.19 -4.6
707,691 - 8667 mRNA_299 0.19 -5.2
707,695 + 8667 mRNA_299 0.19 -0.9
707,696 + 8667 mRNA_299 0.19 -2.9
707,833 - 8667 mRNA_299 0.32 -1.4
707,838 + 8667 mRNA_299 0.32 -3.9
707,866 + 8667 mRNA_299 0.35 -3.7
708,024 + 8667 mRNA_299 0.49 -4.5
708,025 + 8667 mRNA_299 0.49 -2.6
708,158 - 8667 mRNA_299 0.61 -3.8

Or see this region's nucleotide sequence