Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_303

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8670 and 8671 are separated by 717 nucleotides8671 and 8672 are separated by 306 nucleotides mRNA_302: 8670 - K00668 FAS1 fatty acid synthase subunit beta, fungi type, at 717,137 to 721,125 8670 mRNA_303: 8671 - K00222 TM7SF2, ERG24 Delta14-sterol reductase, at 721,843 to 723,815 8671 mRNA_304: 8672 - HMMPfam-Domain of unknown function (DUF1917)-PF08939,SUPERFAMILY--SSF55418, at 724,122 to 725,231 8672

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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721,486 - -0.1
721,618 - -0.1
721,780 - -1.4
721,783 + +0.2
721,783 + +1.5
723,943 + -1.3
723,944 + +0.9
723,954 - -2.0
723,956 + -1.1
723,980 + +0.1
723,990 + -0.3
724,284 - 8672 mRNA_304 0.15 +1.5
724,411 - 8672 mRNA_304 0.26 +0.5
724,415 - 8672 mRNA_304 0.26 -0.9
724,564 + 8672 mRNA_304 0.40 -0.5
724,601 + 8672 mRNA_304 0.43 -0.8

Or see this region's nucleotide sequence