Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_331

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8699 and 8700 are separated by 349 nucleotides mRNA_331: 8699 - K03940 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, at 786,269 to 787,745 8699 mRNA_332: 8700 - HMMPfam-DSS1/SEM1 family-PF05160, at 788,095 to 788,775 8700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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785,366 - -1.6
785,381 + +0.6
785,384 - +1.3
785,412 + -0.6
785,414 + -3.4
785,550 + +0.8
785,553 + +1.5
785,556 - +0.2
785,579 - -0.5
785,592 - +0.4
785,687 - +2.3
785,719 + +0.2
785,866 + -0.1
785,999 + +0.6
786,016 + +1.0
786,129 - -1.1
786,138 + +0.5
786,168 + -0.4
786,243 - +0.0
786,263 + -1.4
786,274 - -0.7
786,276 - +0.8
786,278 + -0.7
786,295 - -1.6
786,295 - +0.0
786,296 - -0.1
786,300 + +1.1
786,302 + +1.1
786,307 - +0.2
786,309 - +1.0
786,315 - +1.0
786,318 - +1.1
786,327 + -1.2
786,912 - 8699 mRNA_331 0.44 +0.6
787,340 - 8699 mRNA_331 0.73 -1.5
787,728 - -1.1
787,787 + -0.5
787,891 + -0.5
787,904 + +1.0
787,928 + +0.2
787,934 + -0.0
788,078 - +0.5
788,078 + -0.4

Or see this region's nucleotide sequence