Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_337

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8703 and 8704 are separated by 463 nucleotides8704 and 8705 are separated by 297 nucleotides8705 and 8706 are separated by 527 nucleotides mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794,212 to 794,991 8703 mRNA_336: 8704 - BLAST AGAP003941-PA [Anopheles gambiae str. PEST], at 795,455 to 795,670 8704 mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795,968 to 797,601 8705 mRNA_338: 8706 - Hypothetical Protein, at 798,129 to 798,620 8706

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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794,984 - +0.3
795,085 + -0.4
795,089 + -1.0
795,096 - -2.1
795,105 - +1.0
795,229 - +0.8
795,259 + +0.4
795,262 + -1.0
795,263 + -0.4
795,272 - +0.2
795,284 - -0.6
795,290 + -0.8
795,677 - +1.2
795,677 - +0.4
795,806 - +1.1
795,822 + +0.7
796,272 + 8705 mRNA_337 0.19 +0.8
796,502 + 8705 mRNA_337 0.33 +0.0
796,620 - 8705 mRNA_337 0.40 -0.4
796,630 + 8705 mRNA_337 0.41 -0.1
796,963 + 8705 mRNA_337 0.61 -0.3
796,970 - 8705 mRNA_337 0.61 +0.4
797,099 - 8705 mRNA_337 0.69 -1.1
797,105 + 8705 mRNA_337 0.70 -0.1
797,388 - 8705 mRNA_337 0.87 +0.5
797,538 + -0.1
797,561 + +1.0
797,652 - +0.3
797,690 - -0.3
797,985 - +0.5
798,133 + +1.2
798,138 - -0.3
798,270 + 8706 mRNA_338 0.29 +0.1
798,291 + 8706 mRNA_338 0.33 +0.4
798,504 - 8706 mRNA_338 0.76 -1.2

Or see this region's nucleotide sequence